[Develop the rural ecology in the New Era]. / 发展新时代的乡村生态学.

Rural ecology is a comprehensive field of study that takes the rural social-ecological-economic systems as the objective object and emphasizes spatial carrier governance. The development of rural ecology in the New Era embodies and implements comprehensively the core concepts of Xi Jinping Thought on Socialism with Chinese Cha-racteristics for a New Era, including harmonious coexistence between humans and nature, rural revitalization, green development, and the comprehensive construction of a socialist modernized nation. Under the goal of Chinese-style modernization, rural ecology exhibits characteristics distinct from the past, such as the integration of research objects, the intersectionality of basic theories, the computational feature of technical methods, and the orientation of exporting outcomes. To provide disciplinary support for modernization-oriented science to meet the new demands of country's rural development, effectively narrating the story of sustainable rural development in China and providing fundamental guarantees for the safety of rural systems, a number of issues such as paradigm innovation in research, improvement of data quality, and integration of comprehensive technologies, should be fully considered.

Moving from ecological impacts to social vulnerability in data-scarce places.

Managers need to trace social impacts and vulnerability caused by environmental change all the way to its driving forces to target key system components for intervention. However, most available scientific evidence deals with either the ecological impacts of direct drivers or the value of ecosystem benefits to people. Our matrix-based tool combines these types of evidence to make environmental management problems traceable through a structured yet flexible procedure. The tool consists of a series of matrices that sequentially link direct drivers of environmental change, landscapes, ecological conditions, benefits to people, and stakeholder types. Qualitative matrices result from the integration and synthesis of available evidence from literature reviews, and where data is scarce, these are used to elicit quantitative scores from expert opinion. Expert scoring of links and multiplication of matrices allow for estimating the impacts of each driver of environmental change on each stakeholder type and using this information as input to assess stakeholders' vulnerability through impact-influence diagrams. Applying the tool to the Argentine Gran Chaco, a globally threatened ecoregion, yielded a transparent and reliable picture of this data-scarce place, with important management implications. Tracing stakeholder impacts back to direct drivers confirmed that further encroachment of cleared areas around indigenous lands will increase the vulnerability of this social group. Also, assessing confidence levels for every social-ecological link suggested that incentivizing peasant farmers to restore natural forage supply represents a management opportunity to reverse degradation. Our tool makes interdisciplinary frameworks of linked ecological and social systems operational so managers can use the best available knowledge of a place and account for uncertainty to make environmental management decisions.

Responses to commentaries on "The gene: An appraisal".

The central conclusions of "The Gene: An Appraisal" are that genetic variance does not underpin biological evolution, and, therefore, that genes are not Mendel's units of inheritance. In this response, I will address the criticisms I have received via commentaries on that paper by defending the following statements: 1. Epistasis does not explain the power-law fitness profile of the Long-Term Evolution Experiment (LTEE). The data from the evolution of natural systems displays the power-law form ubiquitously. Epistasis plays no role in evolution. 2. The common characteristics of living things (natural systems) are described by the principle of least action in de Maupertuis's original form, which is synonymous with the 2nd law of thermodynamics and Newton's 2nd law of motion in its complete form, i.e., F = dp/dt. Organisms strive to achieve free energy balance with their environments. 3. Based on an appraisal of the scientific environment between 1880 and 1911, I conclude that Johannsen's genotype conception was perhaps, the only option available to him. 4. The power-law fitness profile of the LTEE falsifies Fisher's Genetical Theory of Natural Selection, Johannsen's genotype conception, and the idea that 'Darwinian evolution' is an exception to the generic thermodynamic process of evolution in natural systems. 5. The use of the technique of genome-wide association to identify the causes and the likelihoods of inherited common diseases and behavioural traits is a 'wild goose chase' because genes are not the units of inheritance.

Percentage of importance indice-production unknown: loss and solution sources identification on system

Abstract Indices are used to help on decision-making. This study aims to develop and test an index, which can determine the loss (e.g., herbivorous insects) and solution (e.g., natural enemies) sources. They will be classified according to their importance regarding the ability to damage or to reduce the source of damage to the system when the final production is unknown. Acacia auriculiformis (Fabales: Fabaceae), a non-native pioneer species in Brazil with fast growth and rusticity, is used in restoration programs, and it is adequate to evaluate a new index. The formula was: Percentage of the Importance Indice-Production Unknown (% I.I.-PU) = [(ks1 x c1 x ds1)/ (ks1 x c1 x ds1) + (ks2 x c2 x ds2) + (ksn x cn x dsn)] x 100. The loss sources Aethalion reticulatum L., 1767 (Hemiptera: Aethalionidae), Aleyrodidae (Hemiptera), Stereoma anchoralis Lacordaire, 1848 (Coleoptera: Chrysomelidae), and Tettigoniidae, and solution sources Uspachus sp. (Araneae: Salticidae), Salticidae (Araneae), and Pseudomyrmex termitarius (Smith, 1877) (Hymenoptera: Formicidae) showed the highest % I.I.-PU on leaves of A. auriculiformis saplings. The number of Diabrotica speciosa Germar, 1824 (Coleoptera: Chrysomelidae) was reduced per number of Salticidae; that of A. reticulatum that of Uspachus sp.; and that of Cephalocoema sp. (Orthoptera: Proscopiidae) that of P. termitarius on A. auriculiformis saplings. However, the number of Aleyrodidae was increased per number of Cephalotes sp. (Hymenoptera: Formicidae) and that of A. reticulatum that of Brachymyrmex sp. (Hymenoptera: Formicidae) on A. auriculiformis saplings. The A. reticulatum damage was reduced per number of Uspachus sp., but the Aleyrodidae damage was increased per number of Cephalotes sp., totaling 23.81% of increase by insect damages on A. auriculiformis saplings. Here I show and test the % I.I.-PU. It is an new index that can detect the loss or solution sources on a system when production is unknown. It can be applied in some knowledge areas.

Resumo Índices são usados para ajudar na tomada de decisões. Este trabalho teve como objetivo desenvolver e testar um índice capaz de determinar fontes de perda (ex.: insetos herbívoros) e de solução (ex.: inimigos naturais). Eles serão classificados de acordo com sua importância quanto a habilidade de danificar ou reduzir danos no sistema, quando a produção final é desconhecida. Acacia auriculiformis (Fabales: Fabaceae), uma espécie pioneira não nativa do Brasil com rápido crescimento e rusticidade, usada em programas de restauração, é adequada para avaliar um novo índice. A fórmula foi: Porcentagem de Índice de Importância-Produção Desconhecida (% I.I.-PD) = [(ks1 x c1 x ds1)/ (ks1 x c1 x ds1) + (ks2 x c2 x ds2) + (ksn x cn x dsn)] x 100. As fontes de perda Aethalion reticulatum L., 1767 (Hemiptera: Aethalionidae), Aleyrodidae (Hemiptera), Stereoma anchoralis Lacordaire, 1848 (Coleoptera: Chrysomelidae) e Tettigoniidae, e as fontes de solução Uspachus sp. (Araneae: Salticidae), Salticidae (Araneae) e Pseudomyrmex termitarius (Smith, 1877) (Hymenoptera: Formicidae) apresentaram maiores % I.I.-PD nas folhas das mudas de A. auriculiformis. O número de Diabrotica speciosa Germar, 1824 (Coleoptera: Chrysomelidae) foi reduzido pelo número de Salticidae; o de A. reticulatum pelo de Uspachus sp.; e o de Cephalocoema sp. (Orthoptera: Proscopiidae) pelo de P. termitarius em mudas de A. auriculiformis. Entretanto, o número de Aleyrodidae foi aumentado pelo número de Cephalotes sp. (Hymenoptera: Formicidae) e o de A. reticulatum pelo de Brachymyrmex sp. (Hymenoptera: Formicidae) em mudas de A. auriculiformis. O dano de A. reticulatum foi reduzido pelo número de Uspachus sp., mas o dano de Aleyrodidae foi aumentado pelo número de Cephalotes sp., totalizando 23,81% de aumento de danos em mudas de A. auriculiformis. Aqui eu apresento e testo o % I.I.-PD. Ele é um novo índice capaz de detectar fontes de perda e de solução no sistema quando não se conhece a produção final. Ele pode ser aplicado em algumas áreas do conhecimento.

Do arthropods and diseases affect the production of fruits on Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae)?

Abstract Frequencies, magnitudes, and distributions of occurrence can affect the events. The problem can be worse or the solution better if greater frequencies and magnitudes are presented with aggregated distribution in the production system. Indices, hence, are used to assist in decision-making on certain issues. The system formed by Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae), a typical and economically important Brazilian Cerrado tree species, and its several arthropods are adequate to evaluate a new index. This study aimed to test an index to identify the loss and solution sources and their importance in the system's loss or income gain. The index is: Percentage of Importance Indice % I . I . = k s 1 × c 1 × d s 1 / k s 1 × c 1 × d s 1 + k s 2 × c 2 × d s 2 + k s n × c n × d s n x 100. T h e % I . I . separated the loss sources [e.g., Edessa rufomarginata De Geer, 1773 (Hemiptera: Pentatomidae) on fruits = 41.90%)] on the percentage of reduction of fruit production (e.g., 0.13%), calculated the attention level (e.g., 0.10/fruit), with a total lost production of 1.35% ( 307 total lost fruits). The % I.I. also separated the solution sources [e.g., Zelus armillatus (Lep. and Servi., 1825) (Hemiptera: Reduviidae) = 55.48%), the non-attention level (e.g., Z. armillatus: 0.394 for E. rufomarginata on fruit), with total income gain of 0.56% ( 128 total saved fruits) on the natural system (e.g., C. brasiliense trees). This index can calculate losses or the effectiveness of the solutions monetarily. Here I test the % I.I., an index that can detect the key loss and solution sources on the system, which can be applied in some knowledge areas.

Resumo Frequências, magnitudes e distribuição de ocorrência pode afetar os eventos. O problema pode ser pior ou a solução melhor se maiores frequências e magnitudes forem apresentadas com distribuição agregada no sistema de produção. Índices, então, são usados para assistir na decisão de certas questões. O sistema formado pelo Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae), uma espécie arbórea típica e economicamente importante do Cerrado brasileiro, e seus diversos artrópodes são adequados para avaliar um novo índice. A motivação deste trabalho foi testar um índice capaz de identificar as fontes de perda e de soluções, e suas importâncias em termos de perdas ou ganhos no sistema. O índice é: percentagem de importância % I . I . = k s 1 × c 1 × d s 1 / k s 1 × c 1 × d s 1 + k s 2 × c 2 × d s 2 + k s n × c n × d s n x 100. O % I . I . separou as fontes de perda [ex., Edessa rufomarginata De Geer, 1773 (Hemiptera: Pentatomidae) em frutos = 41,90%)] na percentagem de redução na produção de frutos (ex., 0,13%), calculando o nível de atenção (ex., 0,10/fruto), com um total de perda de produção de 1,35% ( 307 frutos totais perdidos). O % I.I. também separou as fontes de solução [ex., Zelus armillatus (Lep. and Servi., 1825) (Hemiptera: Reduviidae) = 55,48%)], o nível de não atenção (ex., Z. armillatus: 0,394 para E. rufomarginata em fruto), com total de ganho de 0,56% ( 128 total de frutos salvos) no sistema natural (ex., árvores de C. brasiliense). Esse índice pode calcular essas perdas ou a eficácia das soluções monetariamente. Aqui eu testo o % I.I., um índice capaz de detectar fatores chaves de perda e de soluções no sistema, capaz de ser aplicado em algumas áreas do conhecimento.

Percentage of importance indice-production unknown: loss and solution sources identification on system / Percentagem de índice de importância-produção desconhecida: identificação de fontes de perda e de solução no sistema

Abstract Indices are used to help on decision-making. This study aims to develop and test an index, which can determine the loss (e.g., herbivorous insects) and solution (e.g., natural enemies) sources. They will be classified according to their importance regarding the ability to damage or to reduce the source of damage to the system when the final production is unknown. Acacia auriculiformis (Fabales: Fabaceae), a non-native pioneer species in Brazil with fast growth and rusticity, is used in restoration programs, and it is adequate to evaluate a new index. The formula was: Percentage of the Importance Indice-Production Unknown (% I.I.-PU) = [(ks1 x c1 x ds1)/Σ (ks1 x c1 x ds1) + (ks2 x c2 x ds2) + (ksn x cn x dsn)] x 100. The loss sources Aethalion reticulatum L., 1767 (Hemiptera: Aethalionidae), Aleyrodidae (Hemiptera), Stereoma anchoralis Lacordaire, 1848 (Coleoptera: Chrysomelidae), and Tettigoniidae, and solution sources Uspachus sp. (Araneae: Salticidae), Salticidae (Araneae), and Pseudomyrmex termitarius (Smith, 1877) (Hymenoptera: Formicidae) showed the highest % I.I.-PU on leaves of A. auriculiformis saplings. The number of Diabrotica speciosa Germar, 1824 (Coleoptera: Chrysomelidae) was reduced per number of Salticidae; that of A. reticulatum that of Uspachus sp.; and that of Cephalocoema sp. (Orthoptera: Proscopiidae) that of P. termitarius on A. auriculiformis saplings. However, the number of Aleyrodidae was increased per number of Cephalotes sp. (Hymenoptera: Formicidae) and that of A. reticulatum that of Brachymyrmex sp. (Hymenoptera: Formicidae) on A. auriculiformis saplings. The A. reticulatum damage was reduced per number of Uspachus sp., but the Aleyrodidae damage was increased per number of Cephalotes sp., totaling 23.81% of increase by insect damages on A. auriculiformis saplings. Here I show and test the % I.I.-PU. It is an new index that can detect the loss or solution sources on a system when production is unknown. It can be applied in some knowledge areas.

Resumo Índices são usados para ajudar na tomada de decisões. Este trabalho teve como objetivo desenvolver e testar um índice capaz de determinar fontes de perda (ex.: insetos herbívoros) e de solução (ex.: inimigos naturais). Eles serão classificados de acordo com sua importância quanto a habilidade de danificar ou reduzir danos no sistema, quando a produção final é desconhecida. Acacia auriculiformis (Fabales: Fabaceae), uma espécie pioneira não nativa do Brasil com rápido crescimento e rusticidade, usada em programas de restauração, é adequada para avaliar um novo índice. A fórmula foi: Porcentagem de Índice de Importância-Produção Desconhecida (% I.I.-PD) = [(ks1 x c1 x ds1)/Σ (ks1 x c1 x ds1) + (ks2 x c2 x ds2) + (ksn x cn x dsn)] x 100. As fontes de perda Aethalion reticulatum L., 1767 (Hemiptera: Aethalionidae), Aleyrodidae (Hemiptera), Stereoma anchoralis Lacordaire, 1848 (Coleoptera: Chrysomelidae) e Tettigoniidae, e as fontes de solução Uspachus sp. (Araneae: Salticidae), Salticidae (Araneae) e Pseudomyrmex termitarius (Smith, 1877) (Hymenoptera: Formicidae) apresentaram maiores % I.I.-PD nas folhas das mudas de A. auriculiformis. O número de Diabrotica speciosa Germar, 1824 (Coleoptera: Chrysomelidae) foi reduzido pelo número de Salticidae; o de A. reticulatum pelo de Uspachus sp.; e o de Cephalocoema sp. (Orthoptera: Proscopiidae) pelo de P. termitarius em mudas de A. auriculiformis. Entretanto, o número de Aleyrodidae foi aumentado pelo número de Cephalotes sp. (Hymenoptera: Formicidae) e o de A. reticulatum pelo de Brachymyrmex sp. (Hymenoptera: Formicidae) em mudas de A. auriculiformis. O dano de A. reticulatum foi reduzido pelo número de Uspachus sp., mas o dano de Aleyrodidae foi aumentado pelo número de Cephalotes sp., totalizando 23,81% de aumento de danos em mudas de A. auriculiformis. Aqui eu apresento e testo o % I.I.-PD. Ele é um novo índice capaz de detectar fontes de perda e de solução no sistema quando não se conhece a produção final. Ele pode ser aplicado em algumas áreas do conhecimento.

Do arthropods and diseases affect the production of fruits on Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae)? / Artrópodes e doenças afetam a produção de frutos em Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae)?

Frequencies, magnitudes, and distributions of occurrence can affect the events. The problem can be worse or the solution better if greater frequencies and magnitudes are presented with aggregated distribution in the production system. Indices, hence, are used to assist in decision-making on certain issues. The system formed by Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae), a typical and economically important Brazilian Cerrado tree species, and its several arthropods are adequate to evaluate a new index. This study aimed to test an index to identify the loss and solution sources and their importance in the system's loss or income gain. The index is: Percentage of Importance Indice [...] separated the loss sources [e.g., Edessa rufomarginata De Geer, 1773 (Hemiptera: Pentatomidae) on fruits = 41.90%)] on the percentage of reduction of fruit production (e.g., 0.13%), calculated the attention level (e.g., 0.10/fruit), with a total lost production of 1.35% (≈ 307 total lost fruits). The % I.I. also separated the solution sources [e.g., Zelus armillatus (Lep. and Servi., 1825) (Hemiptera: Reduviidae) = 55.48%), the non-attention level (e.g., Z. armillatus: 0.394 for E. rufomarginata on fruit), with total income gain of 0.56% (≈ 128 total saved fruits) on the natural system (e.g., C. brasiliense trees). This index can calculate losses or the effectiveness of the solutions monetarily. Here I test the % I.I., an index that can detect the key loss and solution sources on the system, which can be applied in some knowledge areas.

Frequências, magnitudes e distribuição de ocorrência pode afetar os eventos. O problema pode ser pior ou a solução melhor se maiores frequências e magnitudes forem apresentadas com distribuição agregada no sistema de produção. Índices, então, são usados para assistir na decisão de certas questões. O sistema formado pelo Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae), uma espécie arbórea típica e economicamente importante do Cerrado brasileiro, e seus diversos artrópodes são adequados para avaliar um novo índice. A motivação deste trabalho foi testar um índice capaz de identificar as fontes de perda e de soluções, e suas importâncias em termos de perdas ou ganhos no sistema. O índice é: percentagem de importância [...] separou as fontes de perda [ex., Edessa rufomarginata De Geer, 1773 (Hemiptera: Pentatomidae) em frutos = 41,90%)] na percentagem de redução na produção de frutos (ex., 0,13%), calculando o nível de atenção (ex., 0,10/fruto), com um total de perda de produção de 1,35% (≈ 307 frutos totais perdidos). O % I.I. também separou as fontes de solução [ex., Zelus armillatus (Lep. and Servi., 1825) (Hemiptera: Reduviidae) = 55,48%)], o nível de não atenção (ex., Z. armillatus: 0,394 para E. rufomarginata em fruto), com total de ganho de 0,56% (≈ 128 total de frutos salvos) no sistema natural (ex., árvores de C. brasiliense). Esse índice pode calcular essas perdas ou a eficácia das soluções monetariamente. Aqui eu testo o % I.I., um índice capaz de detectar fatores chaves de perda e de soluções no sistema, capaz de ser aplicado em algumas áreas do conhecimento.

Pseudomonas aeruginosa Y12 play positive roles regulating larval gut communities when housefly encountered copper stress.

Heavy metal contamination has become a global concern that threatens the lives of animals and insects throughout the food chain. Pseudomonas is a commonly found genus of bacteria that colonizes the intestines of insects and constitutes a necessary part of the insect gut microbiota. This research analyzed the influence of different concentrations of Cu2+ on housefly larval development, gut microbial structure and antioxidant defense system, and investigated the regulatory mechanism of P. aeruginosa Y12 on the gut microbiota when houseflies were exposed to Cu2+. We found that adding Cu2+ to the larval diet inhibited larval growth, while the mixed addition of P. aeruginosa Y12 and Cu2+ to the diet reduced the inhibitory effects of Cu2+ on larval growth. Oral administration of Cu2+ significantly changed the gut community structure and increased larval gut bacterial diversity. In vitro analysis revealed that P. aeruginosa Y12 showed Cu2+ adsorption effects and increased Cu2+ aggregation. The mixed addition of low concentrations of P. aeruginosa Y12 and Cu2+ to the larval diet caused a dynamic shift in the gut microbiota and resulted in a novel gut community structure with an increase in beneficial bacteria and a decrease in pathogenic bacteria. Furthermore, P. aeruginosa Y12 treatment influenced the activity of antioxidant enzymes in housefly larvae, indicating that the addition of P. aeruginosa Y12 to the larval diet could further influence the antioxidant system through P. aeruginosa Y12-Cu2+ interactions. In conclusion, our research revealed that intestinal flora dysbiosis was the essential reason why copper inhibits housefly larval growth. However, proper supplementation with P. aeruginosa Y12 played positive roles in regulating larval gut communities and protecting insects from toxic heavy metals.

Managing erosion and deposition to stabilize a silt-laden river.

Human regulations are involved in the hydrogeomorphic processes of silt-laden rivers with unprecedented intensity, and further, affect the structures and functions of the riverine social-ecosystem. The braided reach (BR) of the lower Yellow River is one of the world's most sediment-rich and dynamic rivers. In the recent twenty years, the Xiaolangdi Reservoir constructed upstream and the growing river training works have deeply changed the conditions of the BR, however, the behaviors of the fluvial system under multiple human influences and their mechanisms remain unexplored. Here we systematically analyze the changes in the BR in the past four decades from the view of a coupled human and natural system. We find that compared with the pre-dam period, the channel of the BR in the post-dam period is 60 % narrower and 122 % deeper. Meanwhile, the lateral erosion rate and lateral accretion rate have decreased by 164 m yr-1 and 236 m yr-1, and the flood transport capacity has increased by nearly 79 %. These changes were mainly caused by anthropic flow regime changes and boundary modifications, whose relative contributions were 71 ± 10 % and 29 ± 10 %, respectively. The interactions among channel morphology change, regional flood risk and human activities underpinned the evolution of the fluvial system by shifting the human-river relationship. Reach-scale stabilization of a silt-laden river needs the effective management of erosion and deposition processes, which calls for integrated management of soil conservation, dam regulation, and floodplain governance at a basin scale. Lessons from the lower Yellow River have important implications for other rivers faced with siltation problems, especially in the Global South.

Global gateways as telecoupled human and natural systems: The emerging case of the Bering Strait.

Numerous narrow marine passages around the world serve as essential gateways for the transportation of goods, the movement of people, and the migration of fish and wildlife. These global gateways facilitate human-nature interactions across distant regions. The socioeconomic and environmental interactions among distant coupled human and natural systems affect the sustainability of global gateways in complex ways. However, the assessment and analysis of global gateways are scattered and fragmented. To fill this knowledge gap, we frame global gateways as telecoupled human and natural systems using an emerging global gateway, the Bering Strait, as a demonstration. We examine how three telecoupling processes (tourism, vessel traffic, and natural resource development) impact and are impacted by the coupled human and natural system of the Bering Strait Region. Given that global gateways share many similarities, our analysis of the Bering Strait Region provides a foundation for the assessment of other telecoupled global gateways.

Biofilter-constructed wetland-trophic pond system: A new strategy for effective sewage treatment and agricultural irrigation in rural area.

Artificial ecosystems with high biological complexity are generally considered to be efficient in metabolizing substances and resistant to temperature shock. In this study, a novel near-natural system (BCT system), which consisted of simple biofilter, constructed wetland and trophic biology pond, was conducted to treat rural sewage in situ for irrigation into farmland. Water quality related to carbon and nutrients and microbial community were analyzed along the system to reveal the effect of each unit. The annual average removals of BCT system for TN, NH4+-N, TP and COD could reach 46.53%, 52.18%, 41.48%, and 53.21%, respectively. There was no significant decrease for removal efficiencies from high temperature period (HTP, ≥15 °C) to low temperature period (LTP, <15 °C). In LTP, the trophic pond (TRP) removed 34.85% of TN, 33.93% of NH4+-N, 13.71% of TP and 18.77% of COD, while the removal efficiencies of constructed wetland fluctuated greatly. The TRP facilitated the BCT system to maintain the removal capability during low temperature period. The relative abundance of denitrification functional genes in TRP increased nearly tenfold from HTP to LTP. The effluent quality from the system can meet the agricultural irrigation standards, demonstrating the effect of BCT system on sewage treatment and agricultural irrigation in rural area.

Evaluation of the symbiosis level of the water-energy-food complex system based on the improved cloud model: a case study in Heilongjiang Province.

As the conflict between the supply and demand of resources intensifies, it is critical to deeply study the important relationships and symbiotic evolution mechanisms among water resource development and utilization, energy production, agriculture, and the socioeconomic system to promote multiresource synergy management. This study introduced symbiosis theory to build a regional water-energy-food complex system in which the water-energy-food nexus was the main body and the social-economic-natural system was the external environment. Then, a symbiosis evaluation index system was established from three dimensions, including the symbiotic unit, symbiotic relationship, and symbiotic environment. Using the improved cloud model, we judged the symbiosis level of the water-energy-food complex system in Heilongjiang Province from 2010 to 2019. The results indicated that (1) the symbiosis level of the provincial water-energy-food complex system, symbiotic unit, and symbiotic environment was on the rise from level II in 2010 to level IV in 2019, and the symbiosis level of the symbiotic unit fluctuated between level III and level IV. The system exhibited an overall strong symbiosis state. (2) The weights of the three criteria were ranked as symbiotic environment > symbiotic unit > symbiotic relationship. The state of the social-economic-natural system could be considered a "monitor" of the symbiosis level, the symbiotic unit was an important basis for the evolution of the complex system, and the symbiotic relationship was the shortcoming of the system symbiosis enhancement. (3) The trade-offs between food production and water savings constrained socioeconomic development in the province. The resource demands of the economic and social systems and the emissions to the natural system that occurred during the resource exploitation and utilization processes were important factors affecting the coordinated development of the studied system. Overall, the experimental results were consistent with the research subjects' actual situations, and the government should promote the regional three-way flow of social, natural, and economic resources to allow the targeted management of multiresource security.

Renewing Linnaean taxonomy: a proposal to restructure the highest levels of the Natural System.

During the last century enormous progress has been made in the understanding of biological diversity, involving a dramatic shift from macroscopic to microscopic organisms. The question now arises as to whether the Natural System introduced by Carl Linnaeus, which has served as the central system for organizing biological diversity, can accommodate the great expansion of diversity that has been discovered. Important discoveries regarding biological diversity have not been fully integrated into a formal, coherent taxonomic system. In addition, because of taxonomic challenges and conflicts, various proposals have been made to abandon key aspects of the Linnaean system. We review the current status of taxonomy of the living world, focussing on groups at the taxonomic level of phylum and above. We summarize the main arguments against and in favour of abandoning aspects of the Linnaean system. Based on these considerations, we conclude that retaining the Linnaean Natural System provides important advantages. We propose a relatively small number of amendments for extending this system, particularly to include the named rank of world (Latin alternative mundis) formally to include non-cellular entities (viruses), and the named rank of empire (Latin alternative imperium) to accommodate the depth of diversity in (unicellular) eukaryotes that has been uncovered. We argue that in the case of both the eukaryotic domain and the viruses the cladistic approach intrinsically fails. However, the resulting semi-cladistic system provides a productive way forward that can help resolve taxonomic challenges. The amendments proposed allow us to: (i) retain named taxonomic levels and the three-domain system, (ii) improve understanding of the main eukaryotic lineages, and (iii) incorporate viruses into the Natural System. Of note, the proposal described herein is intended to serve as the starting point for a broad scientific discussion regarding the modernization of the Linnaean system.

Opportunities and challenges of machine learning in bioprocesses: Categorization from different perspectives and future direction.

Recent advances in machine learning (ML) have revolutionized an extensive range of research and industry fields by successfully addressing intricate problems that cannot be resolved with conventional approaches. However, low interpretability and incompatibility make it challenging to apply ML to complicated bioprocesses, which rely on the delicate metabolic interplay among living cells. This overview attempts to delineate ML applications to bioprocess from different perspectives, and their inherent limitations (i.e., uncertainties in prediction) were then discussed with unique attempts to supplement the ML models. A clear classification can be made depending on the purpose of the ML (supervised vs unsupervised) per application, as well as on their system boundaries (engineered vs natural). Although a limited number of hybrid approaches with meaningful outcomes (e.g., improved accuracy) are available, there is still a need to further enhance the interpretability, compatibility, and user-friendliness of ML models.

40-years of Lake Urmia restoration research: Review, synthesis and next steps.

Public concern over environmental issues such as ecosystem degradation is high. However, restoring coupled human-natural systems requires integration across many science, technology, engineering, management, and governance topics that are presently fragmented. Here, we synthesized 544 peer-reviewed articles published through September 2020 on the desiccation and nascent recovery of Lake Urmia in northwest Iran. We answered nine questions of scientific and popular interest about causes, impacts, stabilization, recovery, and next steps. We find: (1) Expansion of irrigated agriculture, dam construction, and mismanagement impacted the lake more than temperature increases and precipitation decreases. (2) Aerosols from Lake Urmia's exposed lakebed are negatively impacting human health. (3) Researchers disagree on how a new causeway breach will impact salinity, evaporation, and ecosystems in the lake's north and south arms. (4) Most researchers tried to restore to a single, uniform, government specified lake level of 1274.1 m intended to recover Artemia. (5) The Iranian government motivated and funded a large and growing body of lake research. (6) Ecological and limnological studies mostly focused on salinity, Artemia, and Flamingos. (7) Few studies shared data, and only three studies reported engagement with stakeholders or managers. (8) Researchers focused on an integration pathway of climate downscaling, reservoirs, agricultural water releases, and lake level. (9) Numerous suggestions to improve farmer livelihoods and governance require implementation. We see an overarching next step for lake recovery is to couple human and natural system components. Examples include: (a) describe and monitor the system food webs, hydrologic, and human components; (b) adapt management to monitored conditions such as lake level, lake evaporation, lake salinity, and migratory bird populations; (c) improve livelihoods for poor, chronically stressed farmers beyond agriculture; (d) manage for diverse ecosystem services and lake levels; (e) engage all segments of society; (f) integrate across restoration topics while building capacity to share data, models, and code; and (g) cultivate longer-term two-way exchanges and public support. These restoration steps apply in different degrees to other Iranian ecosystems and lakes worldwide.

Stochasticity-induced persistence in coupled social-ecological systems.

Stochasticity is often associated with negative consequences for population dynamics since a population may die out due to random chance during periods when population size is very low (stochastic fade-out). Here we develop a coupled social-ecological model based on stochastic differential equations that includes natural expansion and harvesting of a forest ecosystem, and dynamics of conservation opinions, social norms and social learning in a human population. Our objective was to identify mechanisms that influence long-term persistence of the forest ecosystem in the presence of noise. We found that most of the model parameters had a significant influence on the time to extinction of the forest ecosystem. Increasing the social learning rate and the net benefits of conservation significantly increased the time to extinction, for instance. Most interestingly, we found a parameter regime where an increase in the amount of system stochasticity caused an increase in the mean time to extinction, instead of causing stochastic fade-out. This effect occurs for a subset of realizations, but the effect is large enough to increase the mean time to extinction across all realizations. Such "stochasticity-induced persistence" occurs when stochastic dynamics in the social system generates benefits in the forest system at crucial points in its temporal dynamics. We conclude that studying relatively simple social-ecological models has the benefit of facilitating characterization of dynamical states and thereby enabling us to formulate new hypothesis about mechanisms that could be operating in empirical social-ecological systems.

Exploring Water Governing System Fit Through a Statistical Mechanics Approach.

Water governing systems are twisted with complex interplays among levels and scales which embody their structures. Typically, the mismatch between human-generated and natural systems produces externalities and inefficiencies reflectable in spatial scales. The largely known problem of fit in water governance is investigated to detect the issues of fit between administrative/institutional scales and the hydrological one in a lake basin. To implement the idea, constraining the level of analysis interlinked to the concentrated levels of administration in spatial scales, the fit of the governing system was analyzed by means of statistical mechanics. Modeling the structure of water demand/supply governing system in a given region through the Curie-Weiss Mean Field approximation, the system cost in relation to its structure and fit was appraised and compared with two other conceptual structures in the Urmia Lake Basin in Iran. The methodology articulated an analysis framework for exploring the effectiveness of the formulated water demand/supply governing system and its fit to the relevant hydrological system. The findings of this study may help developing strategies to encourage adaptations, rescaling/reforms for effective watershed management.

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Understanding the process of nitrogen flow, emission, and utilization in rural systems is of great importance to reduce pollutant emissions caused by agricultural activities and to promote the sustainable utilization of nutrient resources. Based on the NUFER (nutrient flow in food chain, environment and resources use) model and nitrogen footprint approach, we proposed a nitrogen accounting framework for municipal-scale rural systems, and conducted a quantitative and time series-based comparative study on nitrogen flow, recycling, and footprint from the perspective of three subsystems, namely planting, animal husbandry, and rural human settlement in Shenyang from 1998 to 2018. The results showed that: 1) nitrogen utilization rates of the planting subsystem, animal husbandry subsystem, and rural human settlement subsystem were 36.1%, 59.7%, and 70.1%, respectively in 2018, with a growth rate of 15.9%, 9.1%, and 0.7% respectively compared to 1998; 2) The total polluted nitrogen footprint in Shenyang grew rapidly from 1998 to 2014, but declined from 2014 to 2018. In 2018, the total footprint of nitrogen pollution was 123.5 Gg, increasing by 21.6% compared with 1998; 3) In 2018, the unused nitrogen in the planting subsystem, animal husbandry subsystem, and rural human settlement subsystem were 129.5, 62.2, and 8.7 Gg, respectively, which were equivalent to 420.4, 202.1, and 8.7 Gg of nutrient resources from nitrogen fertilizer, respectively. In general, the nitrogen use efficiency of rural system increased gradually from the production end to the consumption end, but the temporal and spatial variation of nitrogen in rural systems need further studies.

Labor force transfer, vegetation restoration and ecosystem service in the Qilian Mountains.

Forest ecosystem conservation practice frequently sacrifices human livelihood, since there exists a structural conflict between both aspects in the degraded forest ecosystem. To reconcile the conflict has been widely viewed as a core issue, in which the payment of ecosystem service (PES) may play a critical role in solving this issue. In order to better understand the practical effectiveness of PES and explore the solution to reconcile the contradiction between conservation and livelihood, we investigated the decadal changes in the Sloping Land Conversion Program as a PES strategy in the Qilian Mountains, a degraded forest ecosystem of northwest China, and its effects on natural and social systems across the 10-year implementation period (2001-2011). The regional NDVI of study site was promoted from 46.24% to 61.28%, showing that vegetation cover had a massive increase during the whole implementation period. Also, the PES strategy had impelled more labor forces as migrant workers into the non-agricultural industries or urban areas. The migration dynamics in three industries demonstrated that the population of primary industry followed a gradually declining trend, and its percentage in total population was lowered from 33.44% to 19.82%. According to our household survey, local farmers reduced the economic investment in agriculture, and this enabled more labor forces to be released from agricultural industry. Interestingly, the attitudes towards the PES program for local inhabitants were gradually shifted from negative at initial stage to acceptable at middle stage, and finally to positive at late stage, as a consequence of PES application. In such case, the PES-led vegetation restoration strategy has been effectively implemented, which can reconcile the contradiction between conservation and livelihood, and ultimately achieve a win-win consequence. Our study provided a successful practical paradigm of coupled human and natural system (CHANS) in forest ecosystem restoration.

Three-Dimensional Phylogeny in Two Dimensions: How Darwin and Other Nineteenth-Century Naturalists Created Three-Dimensional Figures of the Natural System by Combining Trees of Life and Maps of Affinity.

The two great modern naturalists, Linnaeus and Darwin, expressed their intuition about how best to visualize patterns of affinities, that is, morphological similarities and divergences between taxa. Linnaeus suggested that "all plants show affinities on all sides, like a territory on a geographical map," while Darwin thought that it was virtually impossible to understand the affinities between living and extinct species without a genealogical tree. Genealogical trees follow the diachronic, evolving logic of a timeline, whereas maps depict a synchronous pattern of extant taxa. Although the two seem unrelated, various naturalists made attempts to combine them. Surprisingly, these resulted in three-dimensional images that, in order to be observed, had to be projected on paper. The naturalists Max Fürbringer and Richard Bowdler Sharpe were aware of this fact, but even Darwin himself twice combined the basic intuitions underlying the two modes of representation to produce three-dimensional images. This article is a brief history of the efforts to merge genealogical trees and map-like cross sections of affinities into one three-dimensional image.